PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090782.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YB
Protein Properties Length: 204aa    MW: 23215.7 Da    PI: 6.4348
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090782.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.26.7e-5544139297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++w latlGf+dy+eplk yl++yre+ege
  XP_010090782.1  44 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWGLATLGFDDYAEPLKRYLHRYREIEGE 138
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_010090782.1 139 K 139
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.2E-5342158IPR009072Histone-fold
SuperFamilySSF471131.49E-4046158IPR009072Histone-fold
PfamPF008081.2E-2649111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.7E-197795No hitNo description
PROSITE patternPS0068508096IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.7E-1996114No hitNo description
PRINTSPR006156.7E-19115133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVDNNFGINT SERDHHHHHD KGFNYKYTAA GSASTSCEDI GVIKEQDRLL PIANVGRIMK  60
QILPPNAKIS KEAKETMQEC VSEFISFVTG EASDKCHKEK RKTVNGDDIC WGLATLGFDD  120
YAEPLKRYLH RYREIEGEKS SAHQNNKAAS STNHEEIKIN EISNNYGGHE VVLENDHEDI  180
VPNSRTFNFN VVDERSKSSF QKRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-4443134192Transcription factor HapC (Eurofung)
4g91_B2e-4443134192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090782.11e-153Nuclear transcription factor Y subunit B-5
SwissprotO822484e-63NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLW9QWP61e-153W9QWP6_9R
STRINGVIT_07s0104g01640.t011e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-64nuclear factor Y, subunit B5